The restore sequence was constructed with SNPs and InDels based on Nipponare genome. According to the vcf file,
the reference nucleotides were replaced by the related variations in the 'ALT' fields.
As it shows above, the Nipponare sequence between chromosome region Chr10:408029-408045 is 'TTTGCCCTCTGATAGAT', and the restore sequence
of the request sample is 'TTTGCAAGCTTCTTCAGAT' after substitution.